rs31744398 SNP Detail

Summary

• ID
  rs31744398
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27284160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCAGAAG TTTAAGTGTG
  AAGAGCGATA TGAAGTGGAT GGTGAGCAGA GATTGAGACA TCTATGGGCA AGAGTGTCTG
  TTATTTGAAG GGTCAGAAAA GGCAACTTTT AAGAAAGCAG TATTTGGGGC TGGCAGTGTA
  GGTCAGCTCC TTGCCCGGCT TACATGAAGA CAAAGCCCTG GATTTGGTCT CCAGCTCTGT
  K
  TGGTGGCGTA TGCCTGTGAT GCCAACAATG GAGCCCTAAA AGCAAGACGG TAAGGAGCTC
  CGGTCATCCT TGTCTACATA GAGAGTTTGG GGTCAGCCTG GGCTACCCAT AAGACCCTGT
  CTTCAAGAAA AAAGAGAACA AAACAAACTT AAAAAACAAA CAAACTGCTG TCAATACAGA
  GTCCCTTAAG GAAAAATGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45566168	mCV22997013	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31744398					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27284160 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			805 bp distal
Rr574373	regulatory region 574373			909 bp distal
Rr574374	regulatory region 574374			886 bp distal
Tssr28617	transcription start site region 28617			1491 bp upstream
Tssr28618	transcription start site region 28618			1526 bp upstream