rs31744233 SNP Detail

Summary

• ID
  rs31744233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69768314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT GCAGGGAATT CTTTTGCAGA
  Y
  GAATGGCTGG AGGGCAAATT GGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45566082	mCV23153868	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135272151	ENSMUSSNP1089929	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31744233					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69768314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	within coordinates
Rr578229	regulatory region 578229	1070 bp distal
Rr578230	regulatory region 578230	551 bp distal
Rr578231	regulatory region 578231	697 bp distal
Rr578232	regulatory region 578232	648 bp distal
Rr578233	regulatory region 578233	332 bp proximal
Rr578234	regulatory region 578234	450 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Coding-NonSynonymous
Tssr903	transcription start site region 903	1117 bp upstream
Tssr33558	transcription start site region 33558	1080 bp upstream
Tssr33559	transcription start site region 33559	393 bp downstream