rs31743455 SNP Detail

Summary

• ID
  rs31743455
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30171709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTCGAT CAGTATAGGT
  TCTATGTCTG AGGTACAACT TTTGTAAAGG TTAGCAGAAC GCCTCAGAGG AGGAAATTAG
  AGTTAACGCT TATAAGCAAC CAGGTGTTGT TGGAAAGCAA GCAGCTTCCT TGCCTGAGAA
  TCTCAAGCCA AACGATGCCC CAACGGTCTT TTCTTCCTCG TTCATCCAGG GTCTCCCCAA
  W
  GAGAGTTCCT GCTGTCTGGA ATTTTCCCTT CTGACAGTTC CACAACCTGA ACAACTCTGC
  AACTCATAGG AAGAGAGACT CACTTGTGTA GAAGTTTGAT TTCAAGAAAA CACATCAGAT
  AATAATTTCC CCAGTGGTTG CTAGTGTGCT CATGTGCGTG TTCACATGTG TAGAGGTCAT
  GCCTAGTACT GTCCCTCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45565777	mCV24747278	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss134729130	ENSMUSSNP5416130	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31743455					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30171709 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			1156 bp proximal