rs31741960 SNP Detail

Summary

• ID
  rs31741960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50399290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAGGTACTA CTTTTAGTTA GCTCAAAGCC GGAAATTTTC GGTGACTGTA ACAGAGTGTA
  CAAGTCCATT TCAGAAAGCT AAAAGAATGT GTTTTTTACA TAAAGAAATA ATGACATCTT
  AAGGAGATAG AAGTGTTTAC TCTGAGCATT CTACAATGGG CACATGTGCT GAAACTTTAC
  ACCCTATTCA CATACACAGC TTTCATCTTT GTCAGTTAAA AAGAAATTTA AACATATAAA
  AGTACATTAA AACTTCAAAG TGGGGTTAAA ATATTTACAT TGAAAAAATT TCTTTTTTTT
  W
  AAAAAATTAA ACACAAACTT GAAACGTTTT GCTTCTAATC AAGTGTCTTA TGTGTAAAAT
  AAAAATAAAA ATAAAAAATT ACCAAAAGAA AATAAAGCAT CTCAGCTATC AGTCTCGGCA
  CCAGGTCCCT GTGGTTTGAA TTTAATGAGA AGAATCCCAA TGCCATCATT ATCCTGAAGC
  TGTGTTCAGA CCCATGATTA AATATGCTTT TGAATCTCGG AATAAAAACA ACCAACAGAA
  AATCTCCGTG GAAGCAAGGT TGGCTGGAGG GGGAGGGGAA AGGGGTAAGG GGAAGGGGTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45565683	mCV22771302	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31741960					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50399290 () rs orientation: forward

Symbol	Name	Function Class
Rr576159	regulatory region 576159	737 bp distal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	1301 bp downstream
Tssr29027	transcription start site region 29027	1088 bp downstream
Tssr33168	transcription start site region 33168	1418 bp upstream
Tssr33169	transcription start site region 33169	1376 bp upstream
Tssr33170	transcription start site region 33170	1345 bp upstream
Tssr33171	transcription start site region 33171	1321 bp upstream
Tssr33172	transcription start site region 33172	1292 bp upstream
Tssr33173	transcription start site region 33173	1249 bp upstream
Tssr33174	transcription start site region 33174	1226 bp upstream
Tssr33175	transcription start site region 33175	1061 bp upstream