rs31741345 SNP Detail

Summary

• ID
  rs31741345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152656703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGTTACC CTGAGAAAAG
  CAACCTAAGA GAGAAGGGTT TGTTTTCGCT CACAGTTCAA GATACCATGG CGGGGAAGTC
  AAGCCAGCAG GAACCTGAAA CAGCCAATCA CATCCTAGCA CATCCATAGT CTGGAAACGG
  AGAGGATGAA CTGTACCCAG CTTGCTTTCT CCATTCCAAA TATTCATTTT TATGTATGCG
  Y
  CCATCTATGT GCGTACTATG TATGTGCAGT TGCCTGTCGC AGCCAGAAGA GGGCAATGGA
  TCCCCTGAGG TTGGAGTAAC CCAACCCAGG TTCTAGGAAC CCAACTCGGG TTAGCTGGAA
  GAACAAGAAG AATTGTTAAC AGCTGGGCCG CCTCCTCTCT CCAGGCCCAC ATTCTCCACC
  TTATACAGTC CAGGATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45566245	mCV24026539	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss136105128	ENSMUSSNP7069566	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321029350	CHEV_3_152614030	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31741345					SNP	C	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152656703 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	476 bp distal
Rr587635	regulatory region 587635	39 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron