rs31740628 SNP Detail

Summary

• ID
  rs31740628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21992301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GCTGTGGAAG GAGGAAGGCT
  R
  AAGCAGTCTA AGGTTACCAG AGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45565845	mCV24792857	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss134684852	ENSMUSSNP3728773	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320683684	CHEV_3_21837059	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31740628					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21992301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13011	CpG island 13011	1834 bp distal
Gm31813	predicted gene, 31813	within coordinates
Gm64857	predicted gene, 64857	1024 bp downstream
Rr367415	regulatory region 367415	511 bp downstream
Rr574166	regulatory region 574166	1867 bp distal
Rr574167	regulatory region 574167	728 bp distal
Rr574168	regulatory region 574168	within coordinates