rs31738621 SNP Detail

Summary

• ID
  rs31738621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107348474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGGCAC AGACTGGAAG
  GTAAGGCTAG GAGTTCGTTC CTGGGCTGCC TGCTTGCCCT TTAAGAAGGG GCCCGGCCCC
  CAGCTACAGG GCCAAGTTTC TAGAAGCCAA AGCAACAGAT CCAATTCCAA GTCTGCCCCA
  AGGAAATGTT AACTGTGTCC TCAGACTCTG GGTGGGACAG ACTTTTCTGC TAGTGAAGAA
  K
  ATTCAAGGCC TGGATGGGCC TGAGGCTGTA CTGTACCTCT TAGGCTGGGG ACTAGTATAT
  ATGGAGGTTA TGTCCATGAT GCATTCCTTC TTTCCTAGGA CCCTGGGCAA GCACGAGGGC
  AGATAACATA CCTAGTTCTG CCACTAAGTG GGTCCCTGTC TCTTCCCTGT TGAGCCAGGA
  GATGGGGGGA AGGGCACGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45565824	mCV24802274	ABI	CRAMUS_MOUSE	f	SNP		T						G		G
ss46855611	NES10710844	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31738621					SNP	T	T	G	G	G	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855611	NES10710844	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107348474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			within coordinates
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			1670 bp distal