rs31738205 SNP Detail

Summary

• ID
  rs31738205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94981295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTAGCC TTAATGAGCT
  GTTTGTTTGT TTGTACTGTA AGATACTCCA CTGTCCAGAA GCATTCGGCA AAGCCTGCTG
  TAGAAATTCT CTAATCCCAT TATCTAAATA TACAACAAGG TTAAGGGATG ATGAGAACCC
  TTGAAAGTGT CCTGAGGCTG AGCAAAGTCA AGTTGTCTAG GACATTCTCA GAGACATTGA
  Y
  CTCTGTACCT GGGGAAAAAG ATGCTCTCCA CCACGTAGAA GTCTTGCATG AGGACATCAC
  GCTCTGGTTT GGTGCTCAGG CTGCCCACAG TGTGAGTGAT GCCTAACTGG ATGGCACCTT
  TCAAGGCTGA TGAAGTTGTC TAAGAAACAG GAAAGAAATT ACAAAAATGT TCTGGTATCA
  AGTCTAACCA AAGTCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45565232	mCV24558405	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss46771427	NES10631429	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	C	C	C	C
ss135509823	ENSMUSSNP4949487	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31738205					SNP	C	C	T	T	T	C	T	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771427	NES10631429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94981295 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			731 bp distal