rs31736352 SNP Detail

Summary

• ID
  rs31736352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27391459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGCTTG CAATGCATGT
  ATGTGATACA CAGACATACA TTCTGACAAA ATATATCCAT ACACAAAAGT ATTTTTTTAA
  AAGCTTATTT GAATGTAAGA GTATGGCTAG CTGTCACTTC TGATACCCCT TCTTATTTTT
  TTATGACTCA AGCCCTTATA AACTAGCAAA TAGAAGTCAC AGCTACCACT TGAATATAAG
  Y
  ACTTGAATAC CTCCTCTCAC TAGAATACAA CATAGCTTAA TAGTAAAAAT CTTGCCTTAG
  TAAAGTACTT GCATGTCATG TCTACATGAA CCAAATGAAT GTATTAATTA ATAATAGACA
  TAATGATCAC ATCGGAAAGG CTGTGAGAAA TAATGGAGAA CATTTGAAAG CTCAAGATGG
  AAGGGAAAGG CACTTGTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45565218	mCV24740015	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134703982	ENSMUSSNP3220947	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31736352					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27391459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574397	regulatory region 574397			1199 bp proximal
Rr574398	regulatory region 574398			1334 bp proximal
Tnfsf10	tumor necrosis factor (ligand) superfamily, member 10			Intron
				mRNA-UTR