rs31732498 SNP Detail

Summary

• ID
  rs31732498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131307940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGGATGGT AAGATAGTCC ACGTCAAAAA TTGAGTTGTG
  TGTGGAGGAG GCATGGCATG GTTTAAAGTA TTTGTCACGT CTCGTAAAGG TAGTCATGGC
  R
  CCTCTCTCAG TAGAGCTGTC ATGAAGACTA AGCTGTTTTC GTTCTGAACA CTTTGAGTGA
  ACCGTGGGAT CTCGTTTCCA CTTTCCCTCC CCGTGAGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45564680	mCV23191328	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss51640964	NES14656483	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A		G	A	G	A	G	G	G	G
ss135904926	ENSMUSSNP2617062	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31732498					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51640964	NES14656483	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131307940 () rs orientation: forward

Symbol	Name	Function Class
Papss1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	Intron
Rr585372	regulatory region 585372	781 bp proximal