rs31730507 SNP Detail

Summary

• ID
  rs31730507
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30066846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGGGCTGACC CACCCGAGGC GGCGGAGTCC CAGCGACCAG GGACGCTCCG GGGGCACGGG
  GACCTCAGCG CAAACCCGGG ACGCAGACGC TGTCCCCAGC GACACCCTGC CCACAGCCAA
  GACTTTTTAA AGTGAGTTCG CTTACCTTCC GATTTCTACG GCCTCAACTC AGCAATCAAA
  AGCAATCACA GCAGAATTAA ACAAAAATAA GATCAGCAGC AGCCAGGTAC TCGAGTTGGA
  AAATCTTTTC AAAGAACACC CGCTAACATT TCGAGATATT TTAAAAGAAA AAAAAATTTT
  K
  TTTTAAAATA AAAGCCTCGT GTCTCCACTT CCAAATGGGT GTCTGATAAG TTTGTCGTTC
  CCTGGGAGCT GATCGCCAGG ACCACGCGTT TCGGATTTAT TGTCCGCCAA CAGTGTTTTA
  AGACCAGAAT TGAGCCGGGT TTGGTGTATT TGGGTTTTTC CCCTCTTCCT AAATGAGCTC
  GCAGCTATTC CTTCTGGTCT CACTACCTCC CTCTTTCCTC ACTTTCTCTT GCTCTTATCA
  GCCCGATGTG TAATGAAAGT TATCTGAAAC CTACTAAAAC TTCTCCCACT CCTCTGTCGC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45564161	mCV22689455	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31730507					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30066846 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13032	CpG island 13032			104 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46			742 bp proximal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1			913 bp proximal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3			636 bp proximal
Mecom	MDS1 and EVI1 complex locus			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr574700	regulatory region 574700			1809 bp distal
Rr574701	regulatory region 574701			308 bp distal
Rr574702	regulatory region 574702			within coordinates
Rr574703	regulatory region 574703			449 bp proximal
Tssr28678	transcription start site region 28678			488 bp downstream
Tssr32873	transcription start site region 32873			189 bp downstream
Tssr32874	transcription start site region 32874			307 bp downstream
Tssr32875	transcription start site region 32875			328 bp downstream
Tssr32876	transcription start site region 32876			439 bp downstream
Tssr32877	transcription start site region 32877			460 bp downstream
Tssr32878	transcription start site region 32878			535 bp downstream
Tssr32879	transcription start site region 32879			550 bp downstream
Tssr32880	transcription start site region 32880			630 bp downstream
Tssr32881	transcription start site region 32881			652 bp downstream
Tssr32882	transcription start site region 32882			691 bp downstream
Tssr32883	transcription start site region 32883			1690 bp downstream