rs31729377 SNP Detail

Summary

• ID
  rs31729377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146049074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAGTAG CTTGGTCCCT
  GACAGAGGGT GAAGTGCCCT GTGGCTGGCC ATAGCACAGA GCTGGGTGGA AGTGGAGAGT
  CTAATGAAAA CCAGAGTGGT TATCACCTTT CAGGTCCACC CCTATTGACC AACTTCCTAC
  AAATTCCATA GTGTCAAAGG TTCTGGAAAT AGCTACAGTA GCTGAGTTCA AGCATGTGAG
  Y
  GGGTAGGGGA CATTTGAGAC TCCATAATAA CTGAGGGGCT GCTCCTTCCT TAAATAAACT
  GGTTCTGAGG AATATGCTCA GTGCCACAGC TTTGCTTTAA ATCTCCTTGA TTATTTACCT
  TCATTACAAA AATAACTTGT CAATAAAATA AACATGATAC ACCAAAGTCA ACCAGAACTG
  AAGTCAATGT ATCTCAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45564739	mCV24236779	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss136043382	ENSMUSSNP5699701	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321010006	CHEV_3_146006283	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31729377					SNP	C	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146049074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	1966 bp proximal
Rr587007	regulatory region 587007	827 bp distal
Rr587008	regulatory region 587008	385 bp proximal
Rr587009	regulatory region 587009	494 bp proximal
Rr587010	regulatory region 587010	1772 bp proximal