rs31728659 SNP Detail

Summary

• ID
  rs31728659
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41516567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA AGATGGCAGT GGTGATGGAG
  W
  CACCTCTCTT GAAAACCTCC CTCAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	LG/J	SM/J
ss45564840	mCV23248006	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss135042141	ENSMUSSNP6590847	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320728790	CHEV_3_41366054	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	LG/J	SM/J
rs31728659					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41516567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13118	CpG island 13118	1024 bp proximal
Gm31266	predicted gene, 31266	within coordinates
Jade1	jade family PHD finger 1	Intron
Rr575965	regulatory region 575965	822 bp proximal
Rr575966	regulatory region 575966	1216 bp proximal
Rr575967	regulatory region 575967	1556 bp proximal
Rr575968	regulatory region 575968	1810 bp proximal
Tssr29000	transcription start site region 29000	1441 bp downstream
Tssr29001	transcription start site region 29001	408 bp downstream
Tssr29002	transcription start site region 29002	1224 bp upstream
Tssr29003	transcription start site region 29003	1261 bp upstream