rs31728232 SNP Detail

Summary

• ID
  rs31728232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121516090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAAGTAAA AAAGGAAGGA AGAAAGGAAG GAAGGAAGGA
  AGGAAGGAAG GAAGGAAGGA AGATTGTACA AAGCATCCAA AGACACAGAT ATTTACATTA
  Y
  AGTTCATAAC CGTAGCAAAA TTACAGTTAT GAAGTAGCAA TAAAAATAAT TTTATGGTTG
  GGATCACTAC AATATGAGGA GCTGTGTTAA AGGGTCGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45564342	mCV23475907	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135727503	ENSMUSSNP1178489	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
ss320905158	CHEV_3_121425359	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31728232					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121516090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	525 bp proximal
F3	coagulation factor III, tissue factor	1096 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1347 bp distal
Rr584148	regulatory region 584148	522 bp distal
Rr584149	regulatory region 584149	209 bp proximal
Rr584150	regulatory region 584150	283 bp proximal
Rr584151	regulatory region 584151	1063 bp proximal
Rr584152	regulatory region 584152	1107 bp proximal
Rr584153	regulatory region 584153	1279 bp proximal
Rr584154	regulatory region 584154	1291 bp proximal
Tssr31453	transcription start site region 31453	1074 bp upstream
Tssr31454	transcription start site region 31454	1115 bp upstream
Tssr31455	transcription start site region 31455	1139 bp upstream
Tssr31456	transcription start site region 31456	1160 bp upstream
Tssr35426	transcription start site region 35426	954 bp downstream