rs31727681 SNP Detail

Summary

• ID
  rs31727681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43060259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTTGGA ACTCTTTTTA
  CTGCTTCTCC CTACCCTCCA TCTTGCTCCC TCTCCCTTTC CTTATGTCTG TCTCTCTGCC
  CCTCTTTATC TATCTTTATG CCTCTGTCTG TCTGTCTCTG TGTGTATGTA TTTGTCTGTC
  TGTCTGTCTC CGTCTTTGTG TCTATCTCTA TGTCTATAAC CATCTCTCTC TCTCTCTACC
  Y
  TCATCCTTCC TCTGTTTCTC TGTCTCATTT TTGTCTGTTT CTCTCTTCAT TCTTTTCTCT
  CTATCACTGT CCATCTCATC CTCTCTCTGC GGTGTGTGTC TCTCTAGTCC CAGACTTGCA
  TGAGAATCCT TCACATCTGG AAGTTCAGCA AGGCCAGTCT CTTCGCCTCC TCTGTACTGC
  TGACAGCCAG CCCCCTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46062778	mCV22794639	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss322196852	CHEV_7_50666205	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31727681					SNP	C	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43060259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Siglecg	sialic acid binding Ig-like lectin G			Intron
				Noncoding-Transcript-Variant
Tssr65991	transcription start site region 65991			1573 bp downstream
Tssr65992	transcription start site region 65992			1562 bp downstream
Tssr65993	transcription start site region 65993			1534 bp downstream
Tssr65994	transcription start site region 65994			1415 bp downstream