rs31726274 SNP Detail

Summary

• ID
  rs31726274
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135391406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATATTT TCTAAAACAA
  TTCAGCCATT TATTTTTCTA TTAGAATGAG CTGTGGGCTT GACAGAGAGA GCCAGTTGCT
  CCGTAGAGAC CGTTACTATT CTTCTCCGCA CACGGAGAGA CTTGAGAACT ACAGGGGATA
  TGGTAGGTAG CCGGTGGGTG TGCTCTCACA TGGATCTACG GCATAGCAGG TTCAGTTCTA
  W
  CCACAGGATA CATAACAAAT GTAATGACTT GGAAGCTTTT TGCTATTTGA ATAAATAAGA
  TTCATTCAAA CACTCCATTC TCTTAAATGC TAACTTCTTC TCTAGAGGAC ACTTAACCCG
  ATACAGAGCG TTTCTTACTT CAGGCTTATA AATAGTAAGC CCGCTACAGA GACTCTACTG
  AGCCTTGCTT ATCAACAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45564307	mCV25339474	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss135928494	ENSMUSSNP6876653	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31726274					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135391406 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585765	regulatory region 585765	829 bp proximal