rs31725225 SNP Detail

Summary

• ID
  rs31725225
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126418922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAATCG TATGCTCTCT
  GTGTATTACA GAACTTAGGT GAGATTCCTC CTATTTAAAA CTTAAGGTTG TTGTTTCCTT
  AAAAATAGCA TCCTTTCATG TAAAGGCAAG TTGAACACGT GCTCTCCTTT GCACATGTTT
  GGCCTGGCCC TTGGCTTCCC ATTGTTGAGT CATGAACAAA GTGAATCTGT CAAATAATCA
  S
  TTTATGAAGA GGAATTTATA GAATCCCATA CTGGAGAAGC CACAGGTTTG AGCAGGGCTT
  TTATGCGTCT ACGTTCATAA AAAGATGACT CGGCCTTTTC TCTTTCTGTG AGAACACACC
  AAGCAATGAC TCCCATCCCC ACAGTTCTGC TTTTAGACTT GTAACTAAGA TTTCAATAGA
  TGAAGTAGCA ATTTCCAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45564296	mCV23466482	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	G
ss135837348	ENSMUSSNP2580700	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
ss320946782	CHEV_3_126328191	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31725225					SNP	C	C	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126418922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			607 bp upstream
Gm64675	predicted gene, 64675			1758 bp upstream
Rr584659	regulatory region 584659			within coordinates