rs31723505 SNP Detail

Summary

• ID
  rs31723505
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50396984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA TAGGCCACAC TGGCTGCACC
  K
  CACAGGTGTT TCTTCCAGCG AGCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45564212	mCV22771288	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss135160738	ENSMUSSNP1068966	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss320757852	CHEV_3_50246457	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31723505					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50396984 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	within coordinates
Rr576159	regulatory region 576159	1066 bp proximal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	977 bp upstream
Tssr29027	transcription start site region 29027	1212 bp upstream
Tssr33166	transcription start site region 33166	245 bp upstream
Tssr33167	transcription start site region 33167	177 bp downstream
Tssr33168	transcription start site region 33168	881 bp downstream
Tssr33169	transcription start site region 33169	921 bp downstream
Tssr33170	transcription start site region 33170	948 bp downstream
Tssr33171	transcription start site region 33171	977 bp downstream
Tssr33172	transcription start site region 33172	1004 bp downstream
Tssr33173	transcription start site region 33173	1043 bp downstream
Tssr33174	transcription start site region 33174	1068 bp downstream
Tssr33175	transcription start site region 33175	1243 bp downstream