rs31721693 SNP Detail

Summary

• ID
  rs31721693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACGCTG AAGGAAGTCC
  AAAGCTACCA TAAATCAAGG TGCGTCCTTG GAGAGGGGAG CTGGAGATGA CAGAAGAGAC
  ACGGAGAGAA ATCCGCTCTT TGCAGCAGGG AGAGAGGAAG AGAATTCCGA ACTGTCAGGA
  GCGGAGCGGC TCAGAGCCCA TGCACAGATG AGGCCAGACA GACACATGTA ATGAGGGTGC
  R
  CTGGGGAGGC AGACGCTGAG GCTGCTGGCA CGAGTTGACT GACAAGTTTG AACGGCAGCC
  GCACAAGCCC TTTTCCTTCA GGGGCTGCCA GCTCTTTGTT GTGCTGTGCA CGGTTAGCGA
  GACACATTTT CTTATTAACT GTTCCTTACC CAAGTCATTA TTTTCCAGGA GTGGCGCAGG
  GAGCTGCCGT GCTGAGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45564030	mCV23494710	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss135676629	ENSMUSSNP2240840	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31721693					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762410 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			Intron
Cpgi13743	CpG island 13743			within coordinates
Gm52613	predicted gene, 52613			748 bp downstream
Palmd	palmdelphin			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr583815	regulatory region 583815			1557 bp distal
Rr583816	regulatory region 583816			1954 bp distal
Rr583817	regulatory region 583817			484 bp distal
Rr583818	regulatory region 583818			87 bp proximal
Tssr35360	transcription start site region 35360			210 bp upstream
Tssr35361	transcription start site region 35361			193 bp upstream
Tssr35362	transcription start site region 35362			128 bp upstream
Tssr35363	transcription start site region 35363			69 bp upstream
Tssr35364	transcription start site region 35364			within coordinates
Tssr35365	transcription start site region 35365			11 bp downstream
Tssr35366	transcription start site region 35366			29 bp downstream
Tssr35367	transcription start site region 35367			66 bp downstream
Tssr35368	transcription start site region 35368			167 bp downstream
Tssr35369	transcription start site region 35369			208 bp downstream
Tssr35370	transcription start site region 35370			251 bp downstream
Tssr35371	transcription start site region 35371			753 bp downstream