rs31720738 SNP Detail

Summary

• ID
  rs31720738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116529326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAATA GGTTTACTCA
  ATATGCGACT GTTGGTGGTA TGCAGAAGGG GTACTTGATT TAGGCTATAA CAATGCTACT
  AACATAAAAA ATGTAGACAC TTTATGCTCT ACAAATTCTT AGGGATTTGT GGATGTCTGT
  CCTTCCCTGA GATACTACTA TTTATCACAG TCTCAGTGCC ACTTTGTTTG CGAAGAAAAC
  R
  AAGTAGGTGT GTCAGAAATA GCTCAACGGT TGCAAGCACT TACTGCTCTT GCAGAAGACC
  TGGGTTTGGT CCCCAGCATC CACATCAAAT GGCTTACAGC TAGCTATACT TCTAGCTCTA
  GGGGATTCAA CACTCCTTTT CTGGCCTCTG CGGGTACTGT ACATACGTGG CACACAGACT
  CATGTGGACA TACATATGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45563267	mCV22297769	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135671449	ENSMUSSNP473077	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31720738					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116529326 () rs orientation: forward

Symbol	Name	Function Class
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr375627	regulatory region 375627	1140 bp downstream
Rr583772	regulatory region 583772	1706 bp proximal
Rr583773	regulatory region 583773	1783 bp proximal
Rr583774	regulatory region 583774	1808 bp proximal