rs31718323 SNP Detail

Summary

• ID
  rs31718323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172459367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCTGGTCG CAGGCGCCGG ATCTCAGCAA TGGCATCTCC
  TGCGGCCAAA GCCCGCTCCT TCACCAAGTA GCAGGCTAGC ATGGTGCCAG TGCGGCCAAA
  R
  CCTAGGGCAC AGTGCACTCC AACAGCCTGT GAAGTGGAGA CTGATGGAGT AGAGTCCAAT
  GCCCTCCCCA ATACTCCCCT GTCCTCACCC CACACATCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45062839	mCV27569166	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss120015543	PARCsnp_1.10912	PARC_SEQ	INBRED	f	SNP			G	A
ss146197836	ENSMUSSNP4578205	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320126691	CHEV_1_174561931	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31718323					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172459367 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Coding-Synonymous
Gm35601	predicted gene, 35601	1229 bp upstream
Rr396594	regulatory region 396594	1093 bp upstream
Rr423641	regulatory region 423641	494 bp proximal
Rr423642	regulatory region 423642	958 bp proximal
Rr423643	regulatory region 423643	1152 bp proximal
Rr423644	regulatory region 423644	1257 bp proximal
Tssr10245	transcription start site region 10245	1264 bp upstream
Tssr15247	transcription start site region 15247	991 bp downstream
Tssr15248	transcription start site region 15248	1015 bp downstream
Tssr15249	transcription start site region 15249	1131 bp downstream