rs31715606 SNP Detail

Summary

• ID
  rs31715606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101262845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCATGTT GGCAAACACC
  TTTAATCCCA GATCTCTGGA GGCAAAAGCA ATCAGAACTC TGAGTTCAAG ATCAGCCTAG
  TTTACAAAGC CCATTCCAGG CGAGCCTGAG CTACATACAA AGTGAGACCG TGTCTTAAAC
  AAACAAACAA ACAAACAAAC CAAAAATAAA CAAAACCCCA AACAACAACA ACCAAACCAG
  K
  AAAATCACAA AAACTTGGAG GATGGGTGCG TGGGGCCCTC TGTCCCGACT CCCTTGTGTT
  TGAAACACCT CCTCAGCTCC CCTCCCACCA CACACCAGTA TGTCTGAGAG TAAGGATCAG
  AGCTGGGCTG GTGTGGTATG GTGTGGTGGG TTTTGCACAA AGCTGCATTT TAAAGGACAA
  TTAAAGGACA GCTCTTTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45563108	mCV23815903	ABI	CRAMUS_MOUSE	f	SNP	G	G	T				G		G
ss46813949	NES10711672	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T		T	G	G	G		T	G	G	T
ss135546730	ENSMUSSNP6106546	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						G
ss320851922	CHEV_3_101159452	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31715606					SNP	G	G	T	T	G	T	G	T	G	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813949	NES10711672	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101262845 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	926 bp upstream
Rr582017	regulatory region 582017	1074 bp distal
Rr582018	regulatory region 582018	436 bp distal
Rr582019	regulatory region 582019	25 bp proximal
Rr582020	regulatory region 582020	1155 bp proximal