rs31715168 SNP Detail

Summary

• ID
  rs31715168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185994484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA TGCTGCCCCC TCTCCTTGAA
  Y
  TCAGCCTCTG AAACATTAGC CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45062891	mCV25202735	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss46743151	NES10644162	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	T		C	C	C	C		C	C	C	T		C
ss146453777	ENSMUSSNP6018358	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320182587	CHEV_1_188086166	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31715168					SNP	C	C	C	C	T	C	T	T	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743151	NES10644162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185994484 () rs orientation: forward

Symbol	Name	Function Class
D1Mit361	DNA segment, Chr 1, Massachusetts Institute of Technology 361	288 bp distal
D1Mit361.3	DNA segment, Chr 1, Massachusetts Institute of Technology 361.3	160 bp distal
Rr372597	regulatory region 372597	82 bp downstream
Rr425468	regulatory region 425468	304 bp distal
Rr425469	regulatory region 425469	1700 bp proximal