rs31713992 SNP Detail

Summary

• ID
  rs31713992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82050606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA TGTGTATAGT ATACAGTGTT
  Y
  AGAGTTGCCC ACTGCCCTCC CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45563198	mCV24169947	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135401132	ENSMUSSNP3174208	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31713992					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82050606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			1573 bp proximal
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			1335 bp proximal
Rr578751	regulatory region 578751			1764 bp proximal