rs31713397 SNP Detail

Summary

• ID
  rs31713397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120433901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACTCTG GCCTAAAGAT
  TGTTTTTTAT CATTATACTA AATACACTGT AGCTGTCACC AGAAGAAGGC ATCAGATCTC
  ATTACAGATG GTGGTGAGCC ACCATGTAGT TGCTGGGATT TGAACTCAGG ACCTTCAGAA
  GAGCAGTCAG TGCTCTTAAC CGCTGAGCCA TCTCACCAGC CCTTCTCTTT TCTTTTGAAC
  Y
  CCTTAACTTC ACACTTCCAT CCTTCTCAAC AATTCTTTCT CATAATTGTT TATCATTTTC
  CTTGCTAAGT ATAAATTAAA TCTAAATTAC ATACATGGCA TATCAGAAAA TTAAGAATAC
  ATCTATTTTT AATTATCATA CTGTTTCTCA TTATTGCAAG AAAAACCTCC TCTCCACTTG
  GACCTTCACC ACCACTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48080508	NES11867088	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31713397					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48080508	NES11867088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120433901 () rs orientation: forward

Symbol	Name	Function Class
Rr637857	regulatory region 637857	1661 bp distal
Rr637858	regulatory region 637858	340 bp proximal
Rr637859	regulatory region 637859	452 bp proximal
Rr637860	regulatory region 637860	718 bp proximal
Rr637861	regulatory region 637861	914 bp proximal