rs31713395 SNP Detail

Summary

• ID
  rs31713395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120433653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGTTTCT CCCTTCATTC
  TTAGAACAAA AATCTTATTT TACCATATAA CATTTGCCCT CATCTAAAAT ATCCTCTCTT
  CTTTTTTTAA AGATGTATTT ATTTATGTAT ATGAGTATGC TATAACTGGA CAAATGGCTA
  TGAGCCATCA TGTGGTTGCT GGGAATGAAG GTCGCTCGCT CCAGGCAGCT CTGCCCTGCT
  Y
  GCTCCAGACA ACCCTGCAGG TCAGCCCCAC TCACTCTGGT CAGCCCTGCT CACTCTGGCC
  TAAAGATTGT TTTTTATCAT TATACTAAAT ACACTGTAGC TGTCACCAGA AGAAGGCATC
  AGATCTCATT ACAGATGGTG GTGAGCCACC ATGTAGTTGC TGGGATTTGA ACTCAGGACC
  TTCAGAAGAG CAGTCAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48080506	NES11867090	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31713395					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48080506	NES11867090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120433653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	1983 bp distal
Rr637857	regulatory region 637857	1413 bp distal
Rr637858	regulatory region 637858	588 bp proximal
Rr637859	regulatory region 637859	700 bp proximal
Rr637860	regulatory region 637860	966 bp proximal
Rr637861	regulatory region 637861	1162 bp proximal