rs31713171 SNP Detail

Summary

• ID
  rs31713171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120433424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTTTAA ATCTTGGATT
  TGCTATGACT CAATTTCCCC AGGTGGTTAA AGTCTAAAAA CGTGAGCAAA GGCACGGGTA
  GTTAGCGTAA TTAGACATAT GTTAGTGTTC TTTGACCAGC TCCTATAAAT GTTGCCACAA
  GTAGATCAGT GTAGCCTTAG GAATTCTCAT AAACTTTAAC CATCATCCAC AAACCTTATA
  Y
  AATTTACTCA AAACTTTGGT GCTTGGTTTT AAGTTTCTCC CTTCATTCTT AGAACAAAAA
  TCTTATTTTA CCATATAACA TTTGCCCTCA TCTAAAATAT CCTCTCTTCT TTTTTTAAAG
  ATGTATTTAT TTATGTATAT GAGTATGCTA TAACTGGACA AATGGCTATG AGCCATCATG
  TGGTTGCTGG GAATGAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48080502	NES11867093	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31713171					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48080502	NES11867093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120433424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	1754 bp distal
Rr637857	regulatory region 637857	1184 bp distal
Rr637858	regulatory region 637858	817 bp proximal
Rr637859	regulatory region 637859	929 bp proximal
Rr637860	regulatory region 637860	1195 bp proximal
Rr637861	regulatory region 637861	1391 bp proximal