rs31713165 SNP Detail

Summary

• ID
  rs31713165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120432435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGAGCA GGCGCACACC
  ACTTCCTAGA GCTATTTTAA TTCTAGGCAA ACCTAAGGGA GACTCTTTTA AGTATACATT
  TTAAAACCAT TTCCCTATGT GTTACCAGAT TTAAGAGACT CTACCACGAG GTATGATCTC
  AGTTAATGTC TGTTGCCTTC ATGGGGTCTT TTAAAATAGA GACAGCAAGA TGGCTTCTAT
  Y
  GTTTGAGTCT CTATTTTTCA CAAAGCCAAA TCTTTTTTTT TTTTAAATTT TTGTTTTTGT
  TTTGTTTTTT TGTTTAAAGA TTTATTTATT ATTATATGTA AGTAGCTGAC TTCAGACACA
  TCAGAAGAGG GCATCAGGTC TCATTAAGGG TGGTTGTGAG CCACCATGTG GTTGCTAGAA
  TTTGAACTTA GGACCTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48080496	NES11867099	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31713165					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48080496	NES11867099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120432435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	765 bp distal
Rr637857	regulatory region 637857	195 bp distal
Rr637858	regulatory region 637858	1806 bp proximal
Rr637859	regulatory region 637859	1918 bp proximal