rs31713090 SNP Detail

Summary

• ID
  rs31713090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150870911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA GATGCATTTG GAGGAAAGGG
  R
  GTGGTGTTGT GTAAATTGAC TATTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45062129	mCV25101045	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145712195	ENSMUSSNP5700316	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320052994	CHEV_1_152842290	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31713090					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150870911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	1367 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	1725 bp upstream
Rr420193	regulatory region 420193	1619 bp distal
Rr420194	regulatory region 420194	1280 bp distal
Rr420195	regulatory region 420195	1166 bp distal
Rr420196	regulatory region 420196	124 bp distal
Tssr14168	transcription start site region 14168	1711 bp upstream