rs31712833 SNP Detail

Summary

• ID
  rs31712833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120432281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAAGT TTGAGTGGAG
  GATTTTGGGC AAGAAGGCTA AAAGAGAATG ATGCAGAGGA GGCTCCCAGC ACGTAATTTC
  TGAGAAGCCA ATTTTTACTT TCTATGGTGG GAAGCTCTGT GGATCACTAA GACACATAAG
  GCCATACATA TAACTGTGGG AGCAGGCGCA CACCACTTCC TAGAGCTATT TTAATTCTAG
  R
  CAAACCTAAG GGAGACTCTT TTAAGTATAC ATTTTAAAAC CATTTCCCTA TGTGTTACCA
  GATTTAAGAG ACTCTACCAC GAGGTATGAT CTCAGTTAAT GTCTGTTGCC TTCATGGGGT
  CTTTTAAAAT AGAGACAGCA AGATGGCTTC TATTGTTTGA GTCTCTATTT TTCACAAAGC
  CAAATCTTTT TTTTTTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48080494	NES11867098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31712833					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48080494	NES11867098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120432281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	611 bp distal
Rr637857	regulatory region 637857	41 bp distal
Rr637858	regulatory region 637858	1960 bp proximal