rs31712521 SNP Detail

Summary

• ID
  rs31712521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120431401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTGTGG ATGTTCAGAT
  GTAGGACACG TTGTGGACGC TGAGTGACCA ACCGCGTTGT TGTCGGGTCT GGCCTCTCGG
  CTCCTCCCTC CCTTTCTCCC CAGGCGTTCA TACTAGAGAT GCACACGGTG CACCTTCTGC
  CTTGCCAGAT GCCTTAATGG TGGGATTGTG GAGAGGGCAT CTGGGAGAGA CGCTGGAGGA
  R
  ATAAGGAAGG AAGGGAGTTT GTTGCACGGT GCTTGTTTCT GGATGGTTCT GGGCTGGCTT
  GAACTCGGCA CCATTCACCA TGTAGCCTGT TTGGGCTGGC TCTCATAGCA CCCGCTGATG
  GCCCTGTGGA CAAGCTGTGA CTTTGTCCTT CACCGTCACC TATTTGTGGC AGCTACCTTC
  CCTCCCTTAC TTCAGTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss48080482	NES11867100	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	G	G		A		G
ss321929889	CHEV_6_120404458	CHEVERUD	SCREENING_POP	f	SNP										A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31712521					SNP	G	A	A	A	G	A	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48080482	NES11867100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120431401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17921	CpG island 17921	within coordinates
Rr637856	regulatory region 637856	1739 bp distal
Rr637857	regulatory region 637857	within coordinates