rs31712438 SNP Detail

Summary

• ID
  rs31712438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATCTCC AGACTCTGCC
  AAATGTCTCC CAGGAACTAT TCTTTCCTCT TCTCAAGACT ATTGTGATAA ACTTAATGTG
  TATTACATCG CTTTCCTGGG AGGCTCATTA CCTGTATCCT ATTCCTACAA AGGAAAGGCT
  TGGAATCAAT CACTTAAAAC CTTTCAAACA ATCCTGAAAC AACCTGTCTC CAGCTGATGC
  Y
  GCCCAATTCA ATGGTGCACT CGAAATTTTA TTATGAAATA TATTCCTACC CAGTTATTAC
  TTCCAGCTGC TTTGAAAAAG GCACATCACA AAAACTGCAT CTAGGCAAGT ATGTACTTCA
  AAAGTTGCTG GTCCCAGATG GCAGCTTCCT AAAATAACTG TCCTCTGTGG AGACTCCAGA
  GGTCAGTCAG TCACCCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45562638	mCV23032417	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss135180726	ENSMUSSNP737925	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31712438					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	523 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	982 bp upstream
Rr576626	regulatory region 576626	70 bp proximal
Rr576627	regulatory region 576627	874 bp proximal
Rr576628	regulatory region 576628	1029 bp proximal
Rr576629	regulatory region 576629	1573 bp proximal
Rr576630	regulatory region 576630	1588 bp proximal
Rr576631	regulatory region 576631	1890 bp proximal
Tssr29102	transcription start site region 29102	952 bp upstream
Tssr29103	transcription start site region 29103	1065 bp upstream