rs31710171 SNP Detail

Summary

• ID
  rs31710171
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101619698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAAGTCTT CCTTTCTCCT AACGTAGCGG TCCCCTCCAG
  AAAGCATGAC TGGGGTCCAC ACCTGGGTAC CTGCTTGGAA ATGACTTCTC CTGAACAATC
  R
  TCTTTGGAGA AGACCAGAGT GTAACTCTAG GGAGCAGTGT AGGGCAGAAG GTGTAATTGA
  CACTTAGGAA GAGTGACTAG AGAAGCCGTG GGGGCAGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45562506	mCV23381724	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss51582614	NES14672097	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		G	A	G	G	G	G	G	G	G
ss135549452	ENSMUSSNP3771762	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31710171					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582614	NES14672097	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101619698 () rs orientation: forward

Symbol	Name	Function Class
Gm65392	predicted gene, 65392	within coordinates
Rr1547	regulatory region 1547	within coordinates
Rr375471	regulatory region 375471	within coordinates
Rr582112	regulatory region 582112	360 bp distal
Rr582113	regulatory region 582113	within coordinates
Rr582114	regulatory region 582114	386 bp proximal