rs31709831 SNP Detail

Summary

• ID
  rs31709831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36119565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA CACAGGGAGT GGTAGATTCA
  R
  GAAAGGAGGA AACAGCATGC TCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45562370	mCV22322125	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A		A
ss60388000	NES15892820	PERLEGEN	MM_PANEL2	f	SNP			G	A	G	G		G	A	G	A	G	A	G	G
ss134777622	ENSMUSSNP6250011	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31709831					SNP	G	G	G	A	G	G	A	G	A	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388000	NES15892820	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36119565 () rs orientation: forward

Symbol	Name	Function Class
Acad9	acyl-Coenzyme A dehydrogenase family, member 9	563 bp upstream
Rr397642	regulatory region 397642	569 bp downstream
Rr575304	regulatory region 575304	354 bp distal
Rr575305	regulatory region 575305	214 bp distal
Rr575306	regulatory region 575306	34 bp distal
Rr575307	regulatory region 575307	73 bp proximal
Tssr28859	transcription start site region 28859	568 bp upstream
Tssr28860	transcription start site region 28860	630 bp upstream
Tssr28861	transcription start site region 28861	648 bp upstream
Tssr28862	transcription start site region 28862	695 bp upstream