rs31709534 SNP Detail

Summary

• ID
  rs31709534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141928341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGATCGCTT CCCTTTTTCC TCCTCCTCCT CCTCCCCACT CTTCCTACCC ACCACATGGC
  CTCTTTTCCT TTAATTTTTT TTTCTTAAAA GGTATGTGTG TGTAAATAAA TCTATAAATG
  CAACCTGCTG TGTGTCTCTT TCCTATTGCT TGTATCGTAT GTTCCTCGGG CTGACCTGAG
  CACTTGGTAT TGGGTAAGCT TGTAGAGAGC TCATCCACTG GGAAGACTGA GTCTCCCTCT
  CTCAGTAATT GTTGATTACC TGTAGCTCTT TATCTAGGGG TGGACCCACA AGACTTCCCC
  Y
  TTCCAGTTCG GTGTGCCACC TGGTGTTGTC ATTGCTCAGG ATACACTTAG CCAAGCCTTC
  TGTCTGAGTC ACTGGGTGAG TTCCCTAGCC AGTGTCTGCT TCTCACAGGG CTCTTCTCAA
  GCTGACACAT ACGATGTCCC ACACAGTCTA CACAGAGAAA ACACCCAAAC CCAGGAGTAG
  TTCTGGCTTA AAGCATTCAG GACCACACAA CACCATTTTG TTTCTCAGAA AACAATCTGC
  CTTAGGAACC ATGTCTGAGC CTCCCAGGAG GCGCCAGGAG GCGCCAAGAT GCCTTTCTTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45562324	mCV24247151	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T	T
ss136011380	ENSMUSSNP2663697	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31709534					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141928341 () rs orientation: forward

Symbol	Name	Function Class
Rr586397	regulatory region 586397	10 bp proximal
Rr586398	regulatory region 586398	267 bp proximal