rs31708318 SNP Detail

Summary

• ID
  rs31708318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:90648213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAATGCA AGAAACTGTT
  GCAAGAGAGA AAATGTCTAT TTATTACTAA GCAGAGGTAT AAATAAAGGG ATCTAAAAGA
  ATTAAATTCC TTTATTTAAC AGATTATATA AGAACTGGTG ATATAGATGA TGTGGCTAAT
  TTGGGTTAAC TCTGAGCTTT CTAGATATTG AATGAGAGGC CTGTATATAC CAAATTACTC
  Y
  TCCTTTCATC CCTGTGACAC CAAGGACTAC CTTTTTTTTT TTTTTTTAAA TCTCTCTTGT
  TAAAGGCTCA AATGATGTTG GAAAAAGGGA CAGAAAAGAC TCACTTCAAT ATACTCAGTG
  TCATTCGTTC TTTGTAGAGG TAGTCAGGGA AGTCAGCAGG TGACAGGGCT CCCAGGGGGC
  AGACTGGATC CTCCAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596307	NES10455772	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31708318					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596307	NES10455772	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90648213 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	Intron
Gm43449	predicted gene 43449	within coordinates
Rr614365	regulatory region 614365	441 bp proximal
Rr614366	regulatory region 614366	569 bp proximal
Tssr47136	transcription start site region 47136	713 bp downstream
Tssr47137	transcription start site region 47137	651 bp downstream
Tssr47138	transcription start site region 47138	46 bp upstream
Tssr47139	transcription start site region 47139	1047 bp upstream
Tssr47140	transcription start site region 47140	1076 bp upstream
Tssr47141	transcription start site region 47141	1090 bp upstream
Tssr47142	transcription start site region 47142	1178 bp upstream
Tssr51783	transcription start site region 51783	1987 bp upstream
Tssr51784	transcription start site region 51784	1165 bp downstream