rs31707542 SNP Detail

Summary

• ID
  rs31707542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133292112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTAAAACG TCTTTTTCAA AGATTTATTT ATTATTATAT GTAAGTACAT GGTAGCTGTC
  TTCAGACACA CCAGAAGAGG GTGTCAGGTC TCATTATTGA TGGTTGTGAG CCACCATGTG
  GTTTCTGGGA GTTGAATTCA GGACTTTTGG AAGAGCAGTC AGTGCTCTTA ACCGCTGAGC
  CACCTCTCCA GCCCCATTTT TTTTTTTTTT TTTTTTTTTG GTTTTTCGAG ACAGGGTGTA
  GCCTGTATAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTCAAACTCA
  R
  AAATCCACCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GTGTGCACCA CCACGCCCTG
  CTTTTTTTTT TTTTTTAACT TTTTATTGGT TCTTTGTGAA CCTCACATCA GGCACCCCAA
  TCCCACTCAT GTTCCCCTCC GTCTGCCCCC CACCTTTGCA ACCTCCCCCA CAACAGAGGA
  AACAAAAAAA AAATCTCTTG TTGTGGAAGC TATAGTGTGT CATAGTGTCT CTCAGTGTAT
  CCTTTTGCCT ATACTTATTT GCTTGCAAAT GCTCATTATG GTGAGTCACT GGTCTGGTAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45562194	mCV23278127	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31707542					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133292112 () rs orientation: forward

Symbol	Name	Function Class
Gm42567	predicted gene 42567	within coordinates
Rr585577	regulatory region 585577	1279 bp distal
Rr585578	regulatory region 585578	213 bp distal