rs31704868 SNP Detail

Summary

• ID
  rs31704868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48532259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGGAGA CCATCTCGTC
  CAAAACCCTC ATTTTGCAGA AGTGGAAAAA GAAGCTCGGC ACCCCAACTA TGCCTTTCCG
  TGCTCGAGTT CTTTTGCACC CGCCTTTGCC TTGTAACATT TCCCCTTTTC TGATCACTCT
  GGGATCGCCC GGACCGCATG TTGCCCAACC CGCTTACATC TAAGATTGTG GTTTGGGCTC
  Y
  TCCTGCTTTT AACTTTGTAT CTTCAGCCTC CAGAAGGACT CGGGGCCACG CAGTCCAAGT
  CCCATCACTG AGCTTGGCCA TCAGTAAGCT AACCATCACT GACTTCAAGG GAGATACTGT
  GTTTTCCTGG CGGTGGTTAG GGCGTGGATG CCATAACACC GCCCCGGGAT CCAGGTGCAA
  AGGGAATGCA CACTGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46059942	mCV23857809	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T	T
ss149208214	ENSMUSSNP4340483	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31704868					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48532259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	38 bp distal
E2f8	E2F transcription factor 8	915 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	1264 bp downstream
Rr400336	regulatory region 400336	561 bp downstream
Rr646937	regulatory region 646937	1481 bp distal
Rr646938	regulatory region 646938	1127 bp distal
Rr646939	regulatory region 646939	926 bp distal
Rr646940	regulatory region 646940	425 bp distal
Tssr66768	transcription start site region 66768	1146 bp downstream
Tssr66769	transcription start site region 66769	645 bp downstream
Tssr72630	transcription start site region 72630	1521 bp upstream
Tssr72631	transcription start site region 72631	1481 bp upstream
Tssr72632	transcription start site region 72632	1461 bp upstream
Tssr72633	transcription start site region 72633	892 bp upstream
Tssr72634	transcription start site region 72634	840 bp upstream
Tssr72635	transcription start site region 72635	157 bp upstream
Tssr72636	transcription start site region 72636	824 bp downstream