rs31704841 SNP Detail

Summary

• ID
  rs31704841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:65693684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGGGCT ACTCTAGGGT
  TGGCGGTTAG TCCTGACCCA TTCAAAGAGG GAACTCCCTT AGAGCCTGTG TCTCCCTAGA
  AGAGAGATTA GCCTGGAGCA CCCAGCAGGC TGAAGCGGGC CTGCTAGACT TCTGACCTGG
  CTATGGCCTA AGAACTGCAG GAATGAAGTT GGGCTCTGAG TTGCAGCCTG GCCCCCTTCA
  Y
  GACTTGTGGA AAAAGCTTGG GCAAACTGGC TGGTTAGTGA CAAAGAAGGC CTGGGCAATA
  GAATATGCAT GTCAACTTCC CTCTTCTTAA GAAGAACAAA CATTTTGCTT ATTTAAGCAT
  CTGCCCCTGC TACTCTTGAG TTCCCAGTTC ACCCTGAACC TTTCCAGCTT CTTAAAAGCT
  CACTCTTTTC AGCCGTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49766658	NES12377542	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31704841					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49766658	NES12377542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65693684 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm61789	predicted gene, 61789			598 bp upstream
Rr691649	regulatory region 691649			750 bp distal
Rr691650	regulatory region 691650			609 bp distal
Rr691651	regulatory region 691651			363 bp distal
Slitrk2	SLIT and NTRK-like family, member 2			Intron
				mRNA-UTR
Tssr161127	transcription start site region 161127			684 bp downstream
Tssr161128	transcription start site region 161128			631 bp downstream