rs31701157 SNP Detail

Summary

• ID
  rs31701157
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55019689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGC CGGTGTGGTG ACGCGTGGGC
  S
  GGGCCGGACC TAGAGGGCGT CACGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45561889	mCV24669621	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss135186440	ENSMUSSNP1524397	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31701157					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55019689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13184	CpG island 13184			within coordinates
Rr576901	regulatory region 576901			1691 bp distal
Rr576902	regulatory region 576902			within coordinates
Rr576903	regulatory region 576903			240 bp distal
Rr576904	regulatory region 576904			130 bp proximal
Spart	spartin			Intron
				mRNA-UTR
Tssr29147	transcription start site region 29147			97 bp downstream
Tssr29148	transcription start site region 29148			86 bp upstream
Tssr29149	transcription start site region 29149			109 bp upstream