rs31698666 SNP Detail

Summary

• ID
  rs31698666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145123717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATGTCC TTTATTTCTC
  ATCCAACTTA CTTTCTTTAA AAAAAAAAAA TAGCCTGAGT TGAATAAAGA TAGGTGGCAG
  CTCTCTGTCG ATACTCACAT TATCGCCTTT GATTGATTAC CCAGAGGCTC ATCGTTGGCC
  GCGCTGCCAG GCAAGTTTGG GACAGCATGA GTGACCCATT CCTTTCTCGT GTTTCCCATA
  R
  CACAAGTGTG ACTACCGGCA TCTGCTCAGA GGACATTCCA GGCATAGCCT CCTGATCATT
  GCCAGAACTG CCTGGCAATG CTAACGCCTC TCTCTGAGCT TTTATTTTAT GACTGCACAT
  TCGCTCCTAG AGAATAAGAG TCAGGTAGCT GATGGGGAAA TGTCAGAGCC TGACATTTCC
  ACTTGAATAC TTGGCAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45561165	mCV23543637	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		G
ss61093855	NES16613580	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	G	A		A	G	G	G		A	A	A		A
ss136038428	ENSMUSSNP6340280	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss321008294	CHEV_3_145080926	CHEVERUD	SCREENING_POP	f	SNP													G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31698666					SNP	A	A	A	A	A	G	A	G	A	G	G	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093855	NES16613580	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145123717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			1364 bp upstream
Rr586779	regulatory region 586779			within coordinates
Rr586780	regulatory region 586780			72 bp proximal