rs31698602 SNP Detail

Summary

• ID
  rs31698602
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121221102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCAATCGC CGCTGGTGCG GGAAGCCCAG ACAAAGCCTG
  AACGCGCAGC CTGCGAGCCG GATCAGCTGT AGATGAGAGA CTTAGAAATG CAATCCTGAG
  W
  AGTTTGCAGC GCGTTGAATT GTCACGATAT CTCGGCAGGG TCGCTTTTGT TCGAGGTTTA
  TTTGCTGTGG CGGGTTGCAA TTTTGGAGTG ATTGGAATC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45560678	mCV25305156	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss135720550	ENSMUSSNP2210026	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31698602					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121221102 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnn3	calponin 3, acidic			Intron
				Noncoding-Transcript-Variant
Cpgi13758	CpG island 13758			within coordinates
Gm42928	predicted gene 42928			within coordinates
Gm42929	predicted gene 42929			593 bp upstream
Rr397975	regulatory region 397975			835 bp downstream
Rr584073	regulatory region 584073			673 bp distal
Rr584074	regulatory region 584074			within coordinates
Rr584075	regulatory region 584075			1483 bp proximal
Tssr31441	transcription start site region 31441			912 bp downstream
Tssr31442	transcription start site region 31442			878 bp downstream
Tssr35415	transcription start site region 35415			19 bp downstream