rs31696344 SNP Detail

Summary

• ID
  rs31696344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26691958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTACTT
  CTAAGAGCTC TCTGAAGCTC CACAGCAGGT TGGCCTGGGA TTGGGACCGT TGGCACGACA
  GATGCTGTAG GTGGTAGTCA CTCGGCTCCT CTGACCCTAA ACCACACAGG TAGGAAGAGG
  CTGCTTTACC CTAAGAACAA AGCAGTTGGC AGGTTTGTTG TAGAAAAAAG GGGGGATGTC
  R
  GGGAAGCTTG AGTAGCGACA AGAAGTGAGA TCTGCCCCCT ACCATCTCAC GCAGGAACGG
  GGGAATGAAG AAATATCGCT TGTGAACAAT CCTTCCTTCT GTAAGCAGTT AGAAGATAGG
  TTCAAAACTG ATGTCGCCTT TAGGAACCCT TAGCCTTGCC AAACAGGATA TAGGCTCTTT
  CTGTTTTCAT CCCGCTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45560181	mCV24231328	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss134696931	ENSMUSSNP5185656	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs31696344					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26691958 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	255 bp upstream
Gm65438	predicted gene, 65438	999 bp downstream
Rr574324	regulatory region 574324	1404 bp proximal
Rr574325	regulatory region 574325	1638 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	172 bp downstream
Tssr28598	transcription start site region 28598	149 bp downstream