rs31696332 SNP Detail

Summary

• ID
  rs31696332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104960560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG TTCTGCAACT TTTCAGGACC
  Y
  TGGGAACACC TTGTGGTGGC TTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45561249	mCV23788096	ABI	CRAMUS_MOUSE	f	SNP	T		C
ss60431122	NES15934392	PERLEGEN	MM_PANEL2	f	SNP	T	T		C	C	C
ss135572937	ENSMUSSNP5039702	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31696332					SNP	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431122	NES15934392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104960560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	98 bp upstream
Rr367520	regulatory region 367520	94 bp downstream
Rr582659	regulatory region 582659	304 bp distal
Rr582660	regulatory region 582660	within coordinates
Rr582661	regulatory region 582661	1296 bp proximal
Tssr34913	transcription start site region 34913	670 bp upstream
Tssr34914	transcription start site region 34914	527 bp upstream
Tssr34915	transcription start site region 34915	306 bp upstream
Tssr34916	transcription start site region 34916	257 bp upstream
Tssr34917	transcription start site region 34917	93 bp upstream
Tssr34918	transcription start site region 34918	1632 bp downstream