rs31694159 SNP Detail

Summary

• ID
  rs31694159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19371549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGAGAGG GGAGAAAATA
  CCTTCAAGTG CCTTTTCAAT CCCCAGATTC TCTATACATT TGTATTTTCC ATGGATATTT
  ACCAAATAGC CACAAGTGTT TGGATATTCT CCTAGGTATC TAAAATAAGC CAGAGAGTGG
  TCCCTGCCTG AATGACATCA CATAGTAATG GGGGCATGTG TAAGTAAGTA AGTGTGGGAT
  Y
  GTATAACTTG ACATGGTGTT ACTAGGGGCT TTATTTACTC GGCTTTTTGT CACTAGCACA
  TGACTATGAT AGAGAAGCTT ACGAGGAGAA CAATGGAAAG ATCTGTGTGG ATTACAGTTT
  TGCTGTTTTC ATTCCATGGT TGTTTAGACT ATTGTTGCGC CAGTGGCAAA GGAGCTTCAT
  ATCCTATGAT ATGAAGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45560163	mCV22547997	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss134666642	ENSMUSSNP1245032	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320678404	CHEV_3_19217385	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31694159					SNP	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19371549 () rs orientation: forward

Symbol	Name	Function Class
Gm66414	predicted gene, 66414	575 bp downstream
Rr573972	regulatory region 573972	1600 bp distal
Rr573973	regulatory region 573973	1691 bp distal
Rr573974	regulatory region 573974	1577 bp proximal