rs31692600 SNP Detail

Summary

• ID
  rs31692600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83978364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTT TGTCTGGGGC GTGGGGAAGT
  R
  CCTTGCCTTC TGACCAGCAG TGCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45561103	mCV24158570	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A
ss51568937	NES14673798	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		G	A	A	G		A	G		G
ss320822215	CHEV_3_83874979	CHEVERUD	SCREENING_POP	f	SNP													A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31692600					SNP	A	A	G	A	A	A	G	A	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51568937	NES14673798	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83978364 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Gm65750	predicted gene, 65750	912 bp upstream
Rr397735	regulatory region 397735	1579 bp downstream
Rr578974	regulatory region 578974	1617 bp distal
Rr578975	regulatory region 578975	1257 bp distal
Rr578976	regulatory region 578976	422 bp proximal
Rr578977	regulatory region 578977	731 bp proximal
Tssr29729	transcription start site region 29729	941 bp upstream