rs31692265 SNP Detail

Summary

• ID
  rs31692265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106423325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT TATGCTCCTG TGTGTGTGTG
  Y
  GTGTGTGTGT GTGTGTGTGT GTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45561587	mCV23490587	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135579843	ENSMUSSNP6627376	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss320863759	CHEV_3_106318927	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31692265					SNP	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106423325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cept1	choline/ethanolaminephosphotransferase 1			Intron
				Noncoding-Transcript-Variant
Rr582852	regulatory region 582852			692 bp distal
Tssr34966	transcription start site region 34966			1922 bp upstream
Tssr34967	transcription start site region 34967			92 bp downstream
Tssr34968	transcription start site region 34968			126 bp downstream
Tssr34969	transcription start site region 34969			262 bp downstream
Tssr34970	transcription start site region 34970			1006 bp downstream