rs31691221 SNP Detail

Summary

• ID
  rs31691221
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119979932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTGAGG CAGAGGCAGG
  CAGATTTCTG GGTTCGAGGC CAGTCTGGTC TACAAAGTAA GTTCCAGGAC AGCCAGGGCT
  ATACAGAGAA AACCTGTCTT GAAAAACCTA AATAAATAAA TCAATAGAAA TGTGCTAATT
  ATACGTTAAT GATAAATAGC ATTAAAATGA AACAGAAACA CTAATAAAAG TCATTTGCGT
  K
  CCTTAAGAGT TGGAGAACAC AGCCGGATGG TGGTGGCACA CGACTTTAAT CCCAGCACTT
  GGGAGGCAGA GGCAGGCAGA TTTCTGAGTT TGAGGCCAGC CTGGTCTACA AAGTGAGTTC
  CAGGACAGCC AGGGATACAC AGAGAAACCC TGTCTCGAAA AACCAAAAAA AAAAAAAAAA
  AAGAGTTGGA GAACAGAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48078854	NES11865096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31691221					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078854	NES11865096	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119979932 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	within coordinates
Rr637751	regulatory region 637751	830 bp distal
Rr637752	regulatory region 637752	1033 bp distal
Tssr62747	transcription start site region 62747	720 bp upstream
Tssr62748	transcription start site region 62748	647 bp upstream
Wnk1	WNK lysine deficient protein kinase 1	Intron