rs31691218 SNP Detail

Summary

• ID
  rs31691218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119978579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGAATTA TACATGTTTG
  TAAACTACCA CAGCCATGCT GAGAATCAGA TATGGGTCCT CTGCAAAAGC AACAAGTGCT
  CTTAACCAAT GAGTGCTCTA GCTCAATAGT CATGACTTTA AAAAACAAAC AAACAACAAA
  CAAATAAATA AGCAAGGAAG ATACAAGTCA AACCATTGTA ACGTGACAGA CTGCTGACAA
  R
  CAACTAGGTA TCTGTATCAT TGAAAAGACT TTCAAGGTGT AGATAGACAT ACAACTATCA
  CACAACTTTC TTTAAACCAC TCAAGTATTT ATCAAGTTTC AGACACTGTG CTACAAAGTA
  AAGTAGTAGA AGAAGCAGGT ATATGAATAA GGAGCTTGAA TGAATATCAT CATACCCATC
  ATCATCTTCA TCCTCTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48078850	NES11865109	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31691218					SNP	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078850	NES11865109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119978579 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	512 bp upstream
Rr637751	regulatory region 637751	138 bp proximal
Rr637752	regulatory region 637752	299 bp proximal
Tssr62747	transcription start site region 62747	621 bp downstream
Tssr62748	transcription start site region 62748	693 bp downstream
Wnk1	WNK lysine deficient protein kinase 1	Intron