rs31691216 SNP Detail

Summary

• ID
  rs31691216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119977444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAGTATC CATTTTCACG
  TGTACCATAT TTATATAATG GTGATTTGTC GTCCCTTATT ATTTTATTGG GGATTACCCT
  TTCCTACTGA TTCTTAGATA TATACTAAAA CAACTTATGT TAAATTCCCC ATTGCATTTC
  ACAGGTGGCG AGCAGCCAGT TCACATGCAA CCCTTTGCTT GTACCAAAAA TGTTTCTCTA
  Y
  AGTTTTGTTT TGTTTGAACA GGTCTCATTT AGTTGGCCTT TAACTTACTA TGTAGCTGGG
  CCTGGCCTTG AACTCCTGAT TCTGCCTACA TCTTCCAAGT GCTAGGATTA CATGTGAACT
  TCAAACTAGA CTTTCAATAT CGTTTTCATT TGCTTGTTTT AAGATAGTGT CTCGTGTAGC
  CTGGACTGGC CTCAAACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48078848	NES11865115	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31691216					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48078848	NES11865115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119977444 () rs orientation: forward

Symbol	Name	Function Class
Rr380001	regulatory region 380001	1647 bp upstream
Rr637751	regulatory region 637751	1273 bp proximal
Rr637752	regulatory region 637752	1434 bp proximal
Tssr62747	transcription start site region 62747	1756 bp downstream
Tssr62748	transcription start site region 62748	1828 bp downstream
Wnk1	WNK lysine deficient protein kinase 1	Intron